SnpSift TsTv

Calculate transition vs transversion ratios for each sample.

Usage example:

$ java -jar SnpSift.jar tstv hom s.vcf

Sample        : 1   2   3   4   5   6   7   8   9   10  11  12  Total
Transitions   : 150488  150464  158752  156674  152936  160356  152276  155314  156484  149276  151182  153468  1847670
Transversions : 70878   70358   73688   72434   70828   76150   72030   71958   72960   69348   70180   71688   862500
Ts/Tv         : 2.123   2.139   2.154   2.163   2.159   2.106   2.114   2.158   2.145   2.153   2.154   2.141   2.142