SnpEff: Variant analysis

Contents Summary
Change rate by chromosome
Variants by type
Number of variants by impact
Number of variants by functional class
Number of variants by effect
Quality histogram
Coverage histogram
Base change table
Transition vs transversions (ts/tv)
Frequency of alleles
Codon change table
Amino acid change table
Chromosome change plots
Details by gene

Summary

Genome GRCh37.66

Date 2012-04-24 09:15

SnpEff version
2.1a (build 2012-04-20), by Pablo Cingolani

Command line arguments
SnpEff eff -v -useLocalTemplate -stats 1kg/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf.html GRCh37.66 1kg/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf

Warnings 0

Number of lines (input file) 39,706,715

Number of variants (before filter) 39,706,715

Filter

Number of variants filtered out 0

Number of not variants
(i.e. reference equals alternative) 0

Number of variants processed
(i.e. after filter and non-variants) 39,706,715

Number of known variants
(i.e. non-empty ID) 37,979,185 ( 95.649% )

Number of effects 127,992,620

Genome total length 20,682,031,140

Genome effective length 3,036,303,846

Change rate 1 change every 76 bases

Change rate details

Chromosome Length Changes Change rate

1 249,250,621 3,007,196 82

2 243,199,373 3,307,592 73

3 198,022,430 2,763,454 71

4 191,154,276 2,736,765 69

5 180,915,260 2,530,217 71

6 171,115,067 2,424,425 70

7 159,138,663 2,215,231 71

8 146,364,022 2,183,839 67

9 141,213,431 1,652,388 85

10 135,534,747 1,882,663 71

11 135,006,516 1,894,908 71

12 133,851,895 1,828,006 73

13 115,169,878 1,373,000 83

14 107,349,540 1,258,254 85

15 102,531,392 1,130,554 90

16 90,354,753 1,210,619 74

17 81,195,210 1,046,733 77

18 78,077,248 1,088,820 71

19 59,128,983 816,115 72

20 63,025,520 855,166 73

21 48,129,895 518,965 92

22 51,304,566 494,328 103

X 155,270,560 1,487,477 104

Total 3,036,303,846 39,706,715 76

Chromosome	Length	Changes	Change rate
1	249,250,621	3,007,196	82
2	243,199,373	3,307,592	73
3	198,022,430	2,763,454	71
4	191,154,276	2,736,765	69
5	180,915,260	2,530,217	71
6	171,115,067	2,424,425	70
7	159,138,663	2,215,231	71
8	146,364,022	2,183,839	67
9	141,213,431	1,652,388	85
10	135,534,747	1,882,663	71
11	135,006,516	1,894,908	71
12	133,851,895	1,828,006	73
13	115,169,878	1,373,000	83
14	107,349,540	1,258,254	85
15	102,531,392	1,130,554	90
16	90,354,753	1,210,619	74
17	81,195,210	1,046,733	77
18	78,077,248	1,088,820	71
19	59,128,983	816,115	72
20	63,025,520	855,166	73
21	48,129,895	518,965	92
22	51,304,566	494,328	103
X	155,270,560	1,487,477	104
Total	3,036,303,846	39,706,715	76

Number changes by type

Type Total Homo Hetero

SNP 38,248,779 38,248,779 0

MNP 0 0 0

INS 577,896 577,896 0

DEL 880,040 880,040 0

MIXED 0 0 0

Interval 0 0 0

Total 39,706,715 39,706,715 0

Type	Total	Homo
SNP	38,248,779	38,248,779
MNP	0	0
INS	577,896	577,896
DEL	880,040	880,040
MIXED	0	0
Interval	0	0
Total	39,706,715	39,706,715

Number of effects by impact

Type (alphabetical order) Count Percent

HIGH 178,680 0.14%

LOW 663,423 0.518%

MODERATE 860,751 0.673%

MODIFIER 126,289,766 98.67%

Type (alphabetical order)	Count	Percent
HIGH	178,680	0.14%
LOW	663,423	0.518%
MODERATE	860,751	0.673%
MODIFIER	126,289,766	98.67%

Number of effects by functional class

Type (alphabetical order) Count Percent

MISSENSE 854,789 57.183%

NONSENSE 14,815 0.991%

SILENT 625,237 41.826%

Type (alphabetical order)	Count	Percent
MISSENSE	854,789	57.183%
NONSENSE	14,815	0.991%
SILENT	625,237	41.826%

Missense / Silent ratio: 1.3671

Number of effects by type and region

Type Region

Type (alphabetical order) Count Percent

CODON_CHANGE_PLUS_CODON_DELETION 632 0%

CODON_CHANGE_PLUS_CODON_INSERTION 162 0%

CODON_DELETION 1,093 0.001%

CODON_INSERTION 282 0%

DOWNSTREAM 11,666,711 9.115%

EXON_DELETED 130,393 0.102%

FRAME_SHIFT 2,643 0.002%

INTERGENIC 15,542,512 12.143%

INTRAGENIC 165,204 0.129%

INTRON 60,208,947 47.041%

NON_SYNONYMOUS_CODING 852,356 0.666%

NON_SYNONYMOUS_START 138 0%

SPLICE_SITE_ACCEPTOR 13,375 0.01%

SPLICE_SITE_DONOR 15,019 0.012%

START_GAINED 38,052 0.03%

START_LOST 1,621 0.001%

STOP_GAINED 14,815 0.012%

STOP_LOST 814 0.001%

SYNONYMOUS_CODING 624,703 0.488%

SYNONYMOUS_START 1 0%

SYNONYMOUS_STOP 529 0%

TRANSCRIPT 26,447,595 20.663%

UPSTREAM 11,213,085 8.761%

UTR_3_DELETED 2,542 0.002%

UTR_3_PRIME 840,979 0.657%

UTR_5_DELETED 3,684 0.003%

UTR_5_PRIME 204,733 0.16%

Type (alphabetical order) Count Percent

DOWNSTREAM 11,666,711 9.115%

EXON 1,630,182 1.274%

INTERGENIC 15,542,512 12.143%

INTRON 60,208,947 47.041%

NONE 26,612,799 20.792%

SPLICE_SITE_ACCEPTOR 13,375 0.01%

SPLICE_SITE_DONOR 15,019 0.012%

UPSTREAM 11,213,085 8.761%

UTR_3_PRIME 843,521 0.659%

UTR_5_PRIME 246,469 0.193%

Quality:

	
		 Min 0  
		 Max 6,933  
		 Mean 1.146  
		 Median 100  
		 Standard deviation 132.309  
		 Values 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 
		 Count 15454	1280	1341	1524	1156	1589	1237	1195	1276	1074	1569	1064	1410	1440	1157	1711	1295	1271	1919	1242	1228	1550	1293	1232	1595	1393	1515	1521	1564	1293	1464	1424	1319	1409	1410	1387	1653	1554	1466	1355	1558	1731	1701	1830	1909	1634	2448	1733	1710	2238	2190	1672	1551	2270	1513	1712	2070	1705	2009	2400	1668	1747	2137	2495	1643	1718	2104	2033	2448	1981	2160	1912	2832	2306	2260	2786	3173	1798	2367	3007	1867	2976	2247	1640	2457	3603	1950	2442	2737	1941	2581	3361	2247	2532	2641	2514	3153	3339	2087	2691	38251150	2411	3272	3748	2628	2657	2940	2922	2882	3269	3016	3830	2400	2916	4610	2494	2845	2969	2877	2355	3473	2783	2094	4286	3654	2202	4821	2925	2427	3455	3396	3081	3471	3124	2374	3380	3105	2492	4423	3564	3078	2940	3972	2331	3929	3143	2622	3918	3582	2462	4497	3375	2822	4642	3585	2823	3050	3766	3489	2766	3365	3140	3300	3776	3160	3173	3505	3345	5136	2405	3399	3230	2852	3218	4150	2536	3379	2907	2742	3378	3334	3248	3461	4340	3000	3634	4071	2719	3741	3844	3889	3156	4904	2781	2566	3055	3401	2518	3454	2963	3117	2974	2988	3341	3551	2737	2548	3568	2540	2765	5959	2117	3121	3170	2809	2628	3710	2533	3629	3616	2333	2841	4102	3042	3029	3896	2237	2689	4567	2277	3362	4561	2317	2976	3839	2619	2179	2902	2569	2394	3033	2178	2311	3071	2420	2615	3594	2489	3577	2717	2227	2619	4769	2128	2447	2612	2860	2693	3058	2635	3309	2685	2157	2507	3431	2429	2395	3135	2158	2536	4260	2109	2209	3276	2403	2211	2501	2441	2440	2445	2831	2232	2858	2198	2743	2103	2259	2353	2264	2122	2429	2068	2106	3167	4288	2037	2174	2084	2705	2043	2519	2149	2217	2088	2553	1961	2341	2001	2465	2880	1865	2019	2078	2224	1914	1925	2037	2023	2984	1842	2363	1772	1930	2322	1975	2215	2265	1900	1833	2028	2492	1796	2116	1876	1840	2969	3586	1511	1821	2097	1512	1780	2085	1574	1774	2030	1467	2138	2498	1618	2102	1477	1492	1824	1975	1548	2656	2222	1652	1508	1635	1386	1715	2351	1629	1844	2008	2256	1740	1638	1494	1609	1904	1894	1733	1610	1377	2051	2996	1211	1249	1443	1217	1276	1508	1329	1927	2166	1447	1645	2316	1170	1694	1781	1176	1280	1350	1310	1651	1745	1741	1430	1302	1233	1869	1207	1512	1582	2461	1408	1491	1570	1088	1256	1593	1066	1298	1775	1588	1868	2295	1120	1420	1371	1077	1645	1933	1018	1160	1383	1095	1251	1171	1322	1485	1096	980	1320	1315	1013	1210	1314	1474	1507	1401	1090	1168	1384	1730	1545	1299	1326	1345	1552	960	1099	1091	943	1137	915	1123	1580	2601	1223	1618	1522	858	843	1018	1100	1244	1294	949	976	1103	934	1170	1278	1287	1462	1005	927	1076	888	914	1079	1408	994	1328	999	921	1063	1156	928	1011	943	1064	1474	1571	884	839	1002	1336	1854	2064	750	986	886	1164	1171	983	856	999	755	720	870	1175	946	1108	889	1076	957	806	725	1075	851	817	827	1052	788	824	854	1115	1120	1390	922	905	1028	1132	851	1058	778	1445	1387	950	1288	1535	681	637	668	813	688	742	1088	681	1002	637	797	823	741	861	788	1090	985	739	766	794	734	783	819	1212	864	942	869	1143	759	910	850	654	624	769	1325	1054	623	780	924	818	1333	1640	728	996	685	623	638	698	729	690	639	895	733	828	850	700	734	690	832	1088	624	740	562	743	587	583	614	637	700	720	766	749	654	1252	853	550	720	618	536	681	854	1004	1237	1416	668	836	929	505	576	486	653	647	546	499	551	849	634	652	564	698	766	594	711	795	575	502	567	609	612	809	640	731	1016	620	581	552	492	593	772	480	558	564	567	557	901	920	681	575	706	637	907	1122	519	447	421	431	486	476	537	588	578	553	623	541	540	683	838	467	493	583	655	993	612	484	519	613	482	484	451	576	564	635	575	490	485	648	934	914	435	393	437	458	538	518	447	656	654	453	571	676	431	485	460	420	482	462	413	430	558	660	836	605	707	535	562	539	394	427	456	392	391	398	447	508	509	493	536	553	659	713	442	397	366	351	378	394	403	430	411	491	676	643	431	425	388	558	489	695	480	756	505	453	568	328	340	347	384	381	497	452	370	398	366	406	384	319	303	345	385	459	706	655	319	312	366	347	351	348	433	372	335	341	351	362	451	612	611	455	533	305	316	344	409	412	462	671	342	321	310	399	346	473	342	408	383	276	267	325	287	310	363	413	549	487	427	386	303	286	272	285	258	256	306	378	355	351	387	508	304	373	513	567	287	284	341	323	297	318	356	357	312	328	375	460	252	242	274	292	268	292	346	254	310	285	421	376	334	306	346	399	276	356	299	253	279	284	384	287	228	249	236	244	228	275	316	443	346	269	273	250	255	346	346	286	271	217	258	280	254	265	374	367	279	243	229	281	339	248	293	214	264	228	261	300	230	271	209	242	202	217	265	229	199	223	227	220	260	280	263	254	368	296	197	214	255	314	193	196	205	194	213	182	195	193	184	241	235	330	395	414	219	191	248	257	248	181	181	177	161	192	194	180	189	189	205	196	190	193	235	210	192	200	219	214	263	266	262	218	262	202	183	171	225	193	202	242	181	192	190	172	241	197	196	220	160	190	236	248	155	152	135	169	137	167	162	201	168	162	160	200	180	167	171	146	187	150	163	150	190	204	231	228	156	145	137	127	158	136	158	152	182	175	196	159	115	139	128	140	155	166	149	211	217	167	204	189	181	122	153	160	129	148	118	133	116	127	125	130	129	155	136	135	150	165	173	216	159	139	116	135	135	155	121	147	165	150	144	103	101	121	124	151	94	110	101	115	108	123	119	118	148	148	193	147	134	130	125	137	138	123	129	116	121	99	125	116	128	123	111	111	150	138	86	87	93	121	145	143	133	105	109	151	123	98	95	78	96	95	115	116	142	96	104	96	108	82	109	121	132	108	146	134	107	83	89	101	90	126	109	101	86	126	87	88	105	125	120	105	119	127	90	113	78	85	87	108	99	90	73	100	92	106	113	85	85	110	81	115	111	99	84	100	80	72	83	86	87	108	119	114	70	70	68	82	86	72	80	82	95	106	119	91	71	74	76	79	88	59	65	101	88	79	74	97	104	108	80	75	79	86	96	96	100	68	71	70	73	81	62	101	79	72	81	83	99	79	85	106	96	57	69	63	65	92	77	69	75	53	69	66	51	76	57	61	69	73	100	99	60	84	63	66	61	60	66	75	57	56	57	58	73	74	73	72	65	77	59	56	72	79	77	69	71	98	74	74	68	60	69	84	70	64	44	40	45	49	57	42	58	59	58	62	61	42	61	57	48	49	44	61	56	66	69	73	57	58	58	49	70	64	54	47	45	49	43	68	51	42	58	49	48	90	73	77	45	59	44	65	47	57	51	62	53	60	42	57	51	39	54	54	41	37	42	39	38	51	39	48	42	34	49	50	45	40	58	51	50	61	60	43	49	47	42	38	45	40	46	38	59	46	47	62	44	46	35	37	49	46	40	35	49	53	31	38	36	37	30	40	51	41	58	33	46	43	33	48	40	43	39	51	53	30	41	46	33	35	38	39	36	35	36	32	36	34	46	43	42	37	28	44	54	35	29	31	35	37	27	30	37	36	37	28	27	38	34	33	32	43	43	37	42	30	35	36	28	34	38	27	42	41	36	42	45	24	30	36	35	30	22	34	32	30	35	34	27	38	46	45	24	37	29	35	37	31	25	33	25	31	27	31	34	46	28	34	37	31	22	35	29	25	23	32	27	36	30	26	29	25	20	34	24	35	26	27	35	33	26	16	20	23	31	26	33	32	18	31	27	32	25	27	26	24	24	26	16	33	24	32	23	28	25	36	24	26	16	19	25	23	25	28	19	31	15	21	24	24	28	20	26	24	39	40	30	28	29	24	19	39	30	26	26	21	20	26	25	18	21	33	24	27	17	24	15	20	27	31	24	18	29	24	27	14	29	26	20	23	26	28	22	20	28	18	20	22	25	27	26	14	21	17	15	23	22	26	31	20	17	15	26	20	26	37	31	25	22	19	23	17	19	17	23	15	23	21	28	17	19	19	13	21	19	25	26	24	18	18	22	21	22	17	18	22	17	16	15	16	20	12	20	20	24	18	11	18	20	13	16	21	24	20	12	18	19	15	16	23	12	23	17	17	16	27	16	13	20	19	19	14	14	14	13	17	15	17	13	11	14	21	13	6	17	14	26	24	11	19	17	23	11	18	28	21	14	19	15	13	21	16	15	15	17	10	14	18	13	25	13	14	25	14	19	17	15	16	13	10	11	13	18	21	18	14	16	14	14	13	16	8	16	19	14	11	9	16	15	14	20	16	11	10	10	7	13	15	12	14	13	15	11	9	10	13	19	17	14	14	18	20	11	12	11	18	15	10	16	18	9	15	11	17	13	3	12	15	10	9	16	9	13	14	15	11	15	16	19	18	16	18	7	15	14	4	15	15	15	6	15	9	9	15	11	12	18	5	11	9	15	6	9	18	7	16	16	14	11	8	7	13	11	15	10	13	20	13	16	5	16	15	16	14	10	14	15	7	15	7	6	7	11	15	10	8	7	10	4	13	10	13	14	8	17	10	12	10	14	9	9	11	14	6	15	8	6	7	10	11	10	18	13	11	16	8	10	11	12	13	12	10	10	11	9	4	16	8	6	4	9	12	11	10	9	14	4	13	10	13	12	8	8	14	9	11	8	14	12	6	9	3	12	11	5	9	9	13	9	10	12	10	8	2	6	10	6	3	9	11	9	9	11	13	12	8	9	8	10	4	14	11	14	11	7	7	5	6	8	8	10	14	9	7	8	14	11	8	10	16	8	8	10	11	15	9	10	9	9	5	7	10	5	4	10	13	7	6	7	10	6	15	10	5	3	10	8	8	12	9	11	9	8	16	4	7	5	6	4	12	8	13	4	9	11	11	4	10	7	17	4	11	5	2	10	11	6	8	15	10	6	8	9	4	10	10	9	11	2	9	9	5	9	10	8	7	4	9	7	9	3	4	4	6	4	6	11	4	10	11	6	7	8	7	9	7	10	4	8	5	10	7	8	7	5	8	2	4	9	7	7	7	7	3	7	7	9	12	5	3	5	7	2	7	8	12	6	7	3	7	6	7	5	10	9	3	2	3	14	7	5	10	2	6	8	8	4	11	7	5	7	11	2	5	9	9	6	9	7	12	4	5	2	7	7	2	5	5	5	7	4	8	5	2	7	4	6	5	4	9	4	4	6	5	7	5	9	2	4	8	7	4	5	3	11	5	4	5	7	6	2	8	4	4	9	1	2	3	6	6	9	6	1	6	2	4	4	6	8	6	5	9	2	5	6	10	4	5	5	4	5	6	7	7	4	3	3	3	3	4	5	6	1	2	5	4	5	7	6	8	6	4	4	3	2	4	2	4	4	4	10	2	5	6	4	5	3	7	4	7	3	4	5	4	5	6	3	6	1	5	3	3	6	4	2	6	3	2	3	5	3	5	4	7	6	4	1	3	6	3	7	3	2	4	3	2	4	2	5	4	4	3	4	5	6	3	4	3	4	2	2	1	4	2	3	9	8	2	3	6	1	1	3	1	2	4	4	5	6	5	1	4	1	3	7	5	6	6	2	3	7	1	1	5	2	7	4	4	4	1	3	2	4	3	6	2	2	8	3	1	3	5	3	4	5	2	4	3	2	3	2	1	6	5	2	5	4	6	5	2	6	6	4	4	3	3	2	4	4	4	5	7	4	4	5	3	3	4	5	3	4	2	5	2	3	5	1	4	2	1	2	5	4	4	2	3	3	1	9	2	1	3	1	6	5	2	3	3	2	5	5	1	4	3	1	3	3	3	2	5	1	1	3	2	4	5	4	2	3	3	5	1	1	3	7	2	1	7	3	4	1	1	6	1	4	3	3	4	1	2	2	3	2	2	2	1	3	1	3	2	4	1	3	3	5	6	5	2	3	4	1	5	8	1	1	3	1	2	4	2	1	2	3	5	1	2	3	2	4	7	2	3	1	1	3	4	6	1	2	1	2	4	2	6	4	1	4	3	5	6	5	4	4	8	2	6	3	2	6	5	2	2	1	1	2	6	2	1	5	2	6	6	2	1	2	3	2	2	8	3	1	2	1	2	1	2	3	1	1	2	3	1	3	1	3	1	2	1	1	4	3	2	2	3	3	6	3	1	1	2	2	3	2	4	1	2	3	3	3	2	3	2	3	2	3	3	1	2	1	6	2	1	2	1	3	2	2	3	4	2	6	3	2	3	2	1	1	3	1	2	2	3	1	3	2	7	1	2	1	2	4	3	1	1	1	1	3	1	2	2	1	2	4	2	3	2	3	5	1	2	2	2	2	1	1	1	2	3	6	2	4	3	3	3	1	3	3	1	2	3	2	2	2	2	2	4	1	1	1	1	1	2	2	4	1	1	2	5	1	2	1	2	1	3	3	1	1	1	4	2	2	1	2	1	1	2	3	2	2	2	1	2	1	1	3	2	1	1	1	2	2	1	3	2	2	2	1	2	4	3	2	2	1	1	1	1	2	1	2	5	1	2	2	2	2	1	5	2	3	4	2	1	3	2	2	4	2	1	2	2	1	2	1	3	2	1	4	1	1	2	2	2	2	2	2	1	3	3	1	1	2	2	2	1	2	2	1	1	2	2	4	1	1	3	2	1	2	2	1	1	2	4	1	3	1	3	2	1	2	2	1	1	2	1	2	2	1	2	2	2	3	1	5	2	1	2	2	2	1	1	1	1	1	2	2	1	2	3	1	1	1	1	1	5	1	3	1	4	4	2	2	1	1	2	2	2	1	1	4	1	2	3	2	1	2	3	1	1	1	1	2	2	1	1	3	2	1	1	2	1	1	1	1	1	2	1	1	3	2	3	2	4	1	3	1	1	1	3	1	1	3	1	1	3	1	1	1	2	2	1	3	2	2	4	1	1	2	2	1	1	2	1	2	1	5	1	1	1	2	2	3	1	2	1	1	2	1	2	2	1	3	1	1	1	1	1	1	4	2	1	1	1	1	2	1	3	2	1	1	1	3	1	1	1	2	1	1	1	3	2	1	1	1	1	2	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	2	1	2	2	1	1	1	1	1	2	1	1	1	2	1	1	1	2	2	1	1	1	1	1	1	2	1	1	1	2	2	1	2	2	1	1	2	2	2	3	1	1	1	2	1	1	3	1	1	1	3	1	2	1	1	1	1	1	1	1	2	1	1	3	2	1	1	1	1	2	1	1	1	1	3	1	2	2	2	1	4	1	2	2	2	1	2	1	1	1	1	1	1	1	2	1	1	2	1	2	1	1	2	1	1	1	1	1	3	1	1	1	3	1	2	1	2	1	3	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	1	1	2	1	1	1	1	2	2	1	1	2	1	2	2	1	1	1	2	1	1	2	1	2	1	1	1	2	1	1	1	1	1	1	1	3	1	1	1	1	1	1	2	1	2	1	1	1	2	1	1	2	1	1	5	2	2	1	1	1	1	3	1	1	1	2	1	2	1	1	1	2	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	2	3	1	1	1	1	1	2	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	2	1	2	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	3	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1

Min	0
Max	6,933
Mean	1.146
Median	100
Standard deviation	132.309
Values	0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 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2881 2882 2883 2886 2887 2888 2889 2890 2892 2893 2894 2896 2897 2898 2900 2901 2902 2903 2905 2906 2908 2909 2911 2912 2914 2915 2917 2920 2921 2922 2923 2925 2926 2927 2929 2931 2933 2934 2936 2937 2938 2939 2940 2941 2942 2943 2946 2947 2948 2949 2950 2952 2954 2958 2959 2960 2961 2962 2963 2964 2967 2968 2969 2970 2972 2973 2974 2975 2976 2977 2978 2981 2982 2984 2987 2988 2990 2991 2993 2996 2997 2998 2999 3000 3001 3002 3005 3006 3007 3008 3010 3011 3012 3016 3017 3021 3022 3025 3029 3030 3032 3034 3037 3039 3041 3043 3046 3047 3048 3049 3051 3052 3053 3056 3057 3058 3059 3060 3063 3064 3065 3066 3067 3070 3071 3072 3075 3076 3077 3078 3080 3082 3083 3084 3085 3086 3087 3089 3091 3092 3093 3094 3095 3096 3098 3099 3101 3102 3103 3104 3105 3106 3108 3109 3110 3113 3114 3115 3116 3118 3119 3121 3122 3123 3125 3130 3132 3133 3136 3137 3138 3139 3140 3143 3145 3149 3151 3152 3153 3156 3157 3158 3159 3165 3167 3168 3170 3171 3172 3173 3174 3176 3178 3180 3181 3182 3184 3185 3186 3187 3188 3189 3193 3195 3196 3199 3200 3202 3203 3204 3205 3206 3207 3209 3210 3212 3214 3215 3216 3217 3219 3224 3225 3226 3227 3230 3233 3285 3286 3291 3292 3294 3299 3300 3303 3304 3306 3312 3313 3314 3315 3316 3317 3320 3322 3323 3328 3329 3330 3332 3333 3334 3335 3336 3340 3341 3342 3345 3346 3351 3352 3354 3356 3358 3359 3360 3362 3364 3365 3367 3369 3370 3373 3375 3379 3380 3381 3383 3386 3387 3388 3391 3392 3395 3396 3397 3401 3402 3403 3405 3406 3407 3408 3412 3413 3416 3418 3419 3420 3422 3423 3426 3428 3429 3430 3432 3433 3434 3435 3436 3437 3438 3441 3442 3443 3444 3446 3447 3448 3449 3450 3451 3452 3455 3456 3457 3459 3460 3462 3463 3464 3465 3468 3471 3475 3477 3481 3482 3485 3487 3488 3491 3495 3497 3499 3500 3501 3502 3503 3504 3505 3516 3517 3518 3519 3522 3525 3528 3532 3533 3537 3539 3542 3544 3545 3548 3549 3552 3555 3559 3562 3563 3567 3568 3571 3572 3574 3575 3576 3579 3594 3595 3598 3602 3603 3605 3607 3608 3613 3615 3617 3626 3630 3631 3633 3635 3637 3641 3643 3645 3647 3650 3651 3652 3653 3658 3659 3662 3664 3667 3668 3669 3671 3673 3677 3678 3682 3683 3686 3688 3694 3695 3698 3704 3705 3710 3711 3713 3720 3722 3725 3727 3733 3734 3737 3738 3747 3755 3756 3757 3758 3760 3761 3762 3767 3772 3776 3779 3780 3784 3785 3786 3788 3798 3799 3806 3807 3808 3811 3812 3813 3814 3817 3819 3829 3834 3835 3839 3840 3845 3846 3849 3852 3853 3855 3861 3872 3873 3875 3886 3888 3897 3901 3902 3907 3914 3916 3917 3921 3923 3926 3933 3935 3939 3941 3944 3952 3954 3958 3962 3967 3968 3974 3975 3976 3977 3984 3985 3986 3989 3990 3992 4016 4018 4028 4034 4037 4040 4044 4046 4052 4053 4059 4060 4061 4066 4069 4081 4085 4088 4099 4100 4101 4102 4103 4108 4109 4112 4123 4127 4128 4130 4135 4136 4137 4138 4140 4144 4149 4155 4159 4171 4176 4181 4188 4202 4203 4215 4221 4222 4229 4237 4250 4251 4259 4260 4265 4270 4282 4285 4286 4288 4290 4291 4294 4297 4300 4305 4314 4318 4336 4338 4341 4346 4356 4377 4388 4394 4407 4409 4413 4422 4425 4442 4444 4457 4458 4470 4471 4472 4479 4480 4481 4483 4503 4508 4519 4521 4540 4544 4594 4618 4668 4685 4694 4724 4737 4748 4749 4750 4782 4784 4791 4803 4846 4862 4863 4881 4884 4912 4935 4937 4951 4986 4992 5010 5069 5093 5097 5136 5168 5199 5229 5271 5280 5314 5321 5341 5531 5573 5585 5593 5620 5635 5664 5681 5704 5730 5816 5852 5873 5933 5968 5998 6012 6206 6227 6256 6557 6610 6637 6776 6925 6933
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3454 2963 3117 2974 2988 3341 3551 2737 2548 3568 2540 2765 5959 2117 3121 3170 2809 2628 3710 2533 3629 3616 2333 2841 4102 3042 3029 3896 2237 2689 4567 2277 3362 4561 2317 2976 3839 2619 2179 2902 2569 2394 3033 2178 2311 3071 2420 2615 3594 2489 3577 2717 2227 2619 4769 2128 2447 2612 2860 2693 3058 2635 3309 2685 2157 2507 3431 2429 2395 3135 2158 2536 4260 2109 2209 3276 2403 2211 2501 2441 2440 2445 2831 2232 2858 2198 2743 2103 2259 2353 2264 2122 2429 2068 2106 3167 4288 2037 2174 2084 2705 2043 2519 2149 2217 2088 2553 1961 2341 2001 2465 2880 1865 2019 2078 2224 1914 1925 2037 2023 2984 1842 2363 1772 1930 2322 1975 2215 2265 1900 1833 2028 2492 1796 2116 1876 1840 2969 3586 1511 1821 2097 1512 1780 2085 1574 1774 2030 1467 2138 2498 1618 2102 1477 1492 1824 1975 1548 2656 2222 1652 1508 1635 1386 1715 2351 1629 1844 2008 2256 1740 1638 1494 1609 1904 1894 1733 1610 1377 2051 2996 1211 1249 1443 1217 1276 1508 1329 1927 2166 1447 1645 2316 1170 1694 1781 1176 1280 1350 1310 1651 1745 1741 1430 1302 1233 1869 1207 1512 1582 2461 1408 1491 1570 1088 1256 1593 1066 1298 1775 1588 1868 2295 1120 1420 1371 1077 1645 1933 1018 1160 1383 1095 1251 1171 1322 1485 1096 980 1320 1315 1013 1210 1314 1474 1507 1401 1090 1168 1384 1730 1545 1299 1326 1345 1552 960 1099 1091 943 1137 915 1123 1580 2601 1223 1618 1522 858 843 1018 1100 1244 1294 949 976 1103 934 1170 1278 1287 1462 1005 927 1076 888 914 1079 1408 994 1328 999 921 1063 1156 928 1011 943 1064 1474 1571 884 839 1002 1336 1854 2064 750 986 886 1164 1171 983 856 999 755 720 870 1175 946 1108 889 1076 957 806 725 1075 851 817 827 1052 788 824 854 1115 1120 1390 922 905 1028 1132 851 1058 778 1445 1387 950 1288 1535 681 637 668 813 688 742 1088 681 1002 637 797 823 741 861 788 1090 985 739 766 794 734 783 819 1212 864 942 869 1143 759 910 850 654 624 769 1325 1054 623 780 924 818 1333 1640 728 996 685 623 638 698 729 690 639 895 733 828 850 700 734 690 832 1088 624 740 562 743 587 583 614 637 700 720 766 749 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Coverage:

	
		 Min 0  
		 Max 0  
		 Mean 0  
		 Median 0  
		 Standard deviation 0  
		 Values 0	  
		 Count 39706715

Min	0
Max	0
Mean	0
Median	0
Standard deviation	0
Values	0
Count	39706715

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		 Max 204  
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Min	-964,078
Max	204
Mean	-79.939
Median	-1
Standard deviation	3,041.007
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3 3 1 2 2 4 3 1 2 3 3 1 2 2 2 2 5 5 1 3 1 3 1 4 2 1 4 1 2 5 2 1 2 2 4 4 2 2 4 3 2 3 1 1 3 2 4 2 1 5 1 2 1 1 2 1 1 2 2 2 2 3 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 3 1 3 1 1 1 1 1 2 3 2 1 2 1 1 2 1 2 2 1 2 3 3 1 1 2 2 1 1 1 1 1 1 1 1 1 2 2 4 2 2 1 1 2 2 2 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 6 2 14 2 9 3 19 10 24 12 36 38 136 92 169 139 284 252 465 446 811 726 1380 1340 2127 2113 4543 4045 6207 5803 9551 8766 18051 35754 110006 91930 166554 393748 392515 81462 31830 36900 11217 6325 3323 4173 2216 1755 1053 1161 690 686 476 488 361 285 220 204 127 97 63 82 44 28 15 23 15 10 15 11 5 6 3 3 3 3 1 1 1

Base changes (SNPs)

A C G T

A 0 1,354,055 5,318,273 1,311,407

C 1,772,424 0 1,633,912 7,730,953

G 7,768,570 1,624,685 0 1,758,628

T 1,313,500 5,312,221 1,350,151 0

	A	C	G	T
A	0	1,354,055	5,318,273	1,311,407
C	1,772,424	0	1,633,912	7,730,953
G	7,768,570	1,624,685	0	1,758,628
T	1,313,500	5,312,221	1,350,151	0

Ts/Tv (transitions / transversions)

Note: Only SNPs are used for this statistic.
Note: This Ts/Tv ratio is a 'raw' ratio. Some people prefer to use a ratio of rates, not observed events. In that case, you need to multiply by 2.0 (since there are twice as many possible transitions than transversions, E[Ts/Tv] ratio is twice the ratio of events).

Transitions	26,130,017
Transversions	12,118,762
Ts/Tv ratio	2.1562

All variants:

Sample        :	Total
Transitions   :	26130017	26130017
Transversions :	12118762	12118762
Ts/Tv         :	2.156	2.156

Only known variants (i.e. the ones having a non-empty ID field):

Sample        :	Total
Transitions   :	25917251	25917251
Transversions :	12040421	12040421
Ts/Tv         :	2.153	2.153

Frequency of alleles

Note: Number of times an allele appears once (singleton), twice (doubletons), etc.

All variants:

Min 1

Max 1

Mean 1

Median 1

Standard deviation 0

Values 1

Count 38248779

Min	1
Max	1
Mean	1
Median	1
Standard deviation	0
Values	1
Count	38248779

Only known variants (i.e. the ones having a non-empty ID field):

Min 1

Max 1

Mean 1

Median 1

Standard deviation 0

Values 1

Count 37957672

Min	1
Max	1
Mean	1
Median	1
Standard deviation	0
Values	1
Count	37957672

Codon changes

How to read this table:
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

- AAA AAC AAG AAT ACA ACC ACG ACT AGA AGC AGG AGT ATA ATC ATG ATT CAA CAC CAG CAT CCA CCC CCG CCT CGA CGC CGG CGT CTA CTC CTG CTT GAA GAC GAG GAT GCA GCC GCG GCT GGA GGC GGG GGT GTA GTC GTG GTT TAA TAC TAG TAT TCA TCC TCG TCT TGA TGC TGG TGT TTA TTC TTG TTT

- 29 11 24 1 2 9 1 4 9 36 42 7 5 15 7 18 7 15 24 32 30 30 5 8 8 6 8 16 10 5 12 11 6 15 33 12 8 11 18 28 9 4 8 8 3 6 8 4 7 6 10 5 3 9 7 4

AAA 1,260 28 828 6,196 606 1,082 2 4,400 581 1,097 3,368 187

AAC 1,474 1,524 6 1,311 18,035 763 5,802 700 742 2,099 361

AAG 1,796 10,759 1,830 24 1,777 8 1,286 5,732 6 756 1,586 3,387 198

AAT 1,392 700 6,347 565 18 654 10,697 603 1,026 2,477 638

ACA 1,229 813 16 1,434 7,252 1,126 1,061 6 4,390 4 2 500 4,192 751

ACC 1,970 2,125 2,117 10 3,043 14,941 1,579 4,975 554 3,316 825

ACG 631 605 21,381 1,290 4 1,408 555 17,384 135 1,091 248

ACT 1,150 4 781 741 3,743 1,306 13 1,662 3,233 607 3,842 939

AGA 659 2,220 968 5 507 2,750 514 731 736 1,921 116

AGC 1,960 4,657 1,452 1,358 5 1,215 14,203 1,065 576 2,990 453

AGG 1,077 5 3,006 723 4,531 716 6 941 466 963 1,738 257

AGT 806 3,817 1,363 494 3,549 587 18 742 665 3,091 615

ATA 362 178 2,557 257 476 1,966 475 432 4,620 551

ATC 1,450 847 2,208 419 2,751 7 1,635 13,989 908 6,923 902

ATG 1,110 2 817 6,418 1 1 817 4,581 826 10 1,147 1,220 9,563 1,474

ATT 663 5 402 5,837 517 903 3,260 1,139 13 662 6,715 705

CAA 783 1,018 8 821 8,276 509 753 2,229 310 1,436 791

CAC 1,345 798 950 3 1,316 14,844 448 2,424 516 577 3,282

CAG 3,213 1,665 9,420 2,838 11 1,960 4 1,294 6,215 1,108 2,599 2,234

CAT 950 567 545 5,356 537 2 567 4,809 731 521 2,495

CCA 1,380 1,382 893 5 1,425 7,489 933 1,023 3,724 3 1,822 3,898

CCC 1,814 1,917 1,296 1,909 7 3,537 16,979 1,608 4,023 3 1,562 5,571

CCG 640 321 660 23,208 1,193 7 1,706 757 14,316 430 1,296

CCT 1,007 1,753 4 866 1,043 4,453 1,305 10 3 1,496 3,928 2,197 5,571

CGA 602 1,265 12,733 515 5 436 1,061 302 670 884 5,265

CGC 934 970 2 19,001 1 429 747 4 723 6,117 1,762 646 17,352

CGG 706 2,219 26,053 873 3,491 899 7 1,096 935 961 22,156

CGT 265 524 14,092 424 202 1,135 245 1 677 394 8,776

CTA 439 384 178 2 799 182 4 555 4,945 330 939 2,144

CTC 1,410 917 437 1,142 3 472 1,309 2 3,572 12,493 1,876 4,635

CTG 3,649 1,878 934 1 3,516 3 3 4 1,018 11,414 3,913 26 3,150 3,638 11,167

CTT 643 834 3 237 1,394 2 518 492 2,389 1,074 2 1,280 2,611

GAA 1,822 7,175 1,749 23 1,635 7,693 1,034 1,188 6 3,032 12 5 697 3 664

GAC 2,546 8,917 1,540 2,063 8 2,205 24,104 631 78 2,742 1,015 1 1,169

GAG 2,968 13,336 3,287 14,790 3,133 38 2,240 1 4 1,378 4 3 3,441 3 1,188 775

GAT 1,530 6,904 1,639 1,312 7,995 1,262 10 633 3,741 1,812 1,535

GCA 1,169 7,572 816 1,000 1 4 1,654 6,413 896 948 3,499 4 1,602

GCC 2,782 13,021 1,035 1 1,726 1,979 21 2,894 21,078 1,555 6,408 3,002

GCG 799 2,802 218 866 21,271 1,139 6 1,172 559 13,512 582

GCT 1,340 6,768 1,245 844 909 4,784 1,071 1 1 1,402 2 3,658 2,148

GGA 1,662 5,610 522 2,885 1 1,155 2 1,065 3,036 1,157 1,017 277

GGC 3,047 9,757 870 4,258 1,239 2,332 16 1,611 14,030 1,737 1 905

GGG 946 6,738 1,338 3,025 1,199 6,869 1,497 10 2,397 995 808

GGT 921 4,211 800 2,704 699 548 2,741 638 4 4 1,342 760

GTA 346 4,833 628 191 1,222 210 3 383 2,891 413 641

GTC 1,357 12,606 1,007 4 444 1,539 282 1 1,113 1 1,825 7,642 1,099

GTG 2,869 18,398 2,084 2 576 3,613 2 823 8,947 1,781 43 1,920 2,542

GTT 536 6,922 989 297 2,081 342 335 1,516 734 3 1,077

TAA 13 12 54 19 16 81 16 19 146 15

TAC 1,301 310 1,803 321 327 4 379 15,539 416 2,478 556

TAG 13 12 77 28 58 33 2 12 6 28 3

TAT 487 261 1,782 253 249 6,903 215 2 370 5,621 840

TCA 1,523 649 1,452 644 223 1 2 1,093 4,567 937 327 2,363

TCC 2,033 944 1,601 857 1,055 1 1,019 15 1,720 13,381 1,604 2 1 3,491

TCG 411 95 353 90 126 14,958 1,156 1,066 542 8,316

TCT 1,370 794 1,705 816 840 663 3,648 965 21 2,245 2,359

TGA 74 35 145 32 244 52 22 53 20 18

TGC 1,499 356 1,151 399 1,526 480 251 8 401 8,732 639

TGG 1,634 271 1,676 326 906 321 895 559 1 590 448

TGT 1,084 373 1,735 529 2,092 757 131 2,263 244 1 463

TTA 330 304 1,163 370 66 827 91 13 309 1,974 268

TTC 1,318 391 1,889 627 464 1,115 507 6 1,067 30 1,195 11,336

TTG 604 538 5,458 837 125 1,349 577 3,322 1,064 2 814

TTT 754 360 1,702 477 475 1 1,324 613 446 4,055 756 4

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

* - ? A C D E F G H I K L M N P Q R S T V W Y

* 531 95 5 42 47 32 24 36 131 180 77 81 77

- 130,393 68 11 18 16 13 66 7 12 53 50 15 12 116 33 72 68 16 23 10

? 4 178

A 6,088 2 65,292 2,570 1,868 4,465 3,314 7,334 30,163 27,083

C 382 2,582 1 11,004 1,102 928 2,886 1,966 645 3,618

D 4,076 1,342 32,117 6,842 6,483 3,179 15,821 2,828 2,704

E 1,439 4,790 2,581 8,042 22,544 6,493 20,511 5,036 1,891

F 2,070 2 1,126 15,425 751 7,055 2,440 1,104 939

G 277 6,573 3 4,292 1,665 6,962 5,911 37,953 15,878 13,968 5,096 808

H 2,295 1,098 20,205 1,247 1,365 1,015 3,348 7,233 5,777

I 2,475 1,607 21,874 183 2,553 4,740 1,249 257 936 10,602 18,258

K 385 3,056 6,755 587 17,007 756 5,041 2,683 10,132 2,378

L 282 7,072 3 9,701 677 2,439 70,913 2,416 6,858 1,114 2,199 2,176 8,940 577

M 1,083 27 6,554 817 2,694 10 2 818 1 6,418 9,563

N 2,866 4,576 1,768 1,303 4,100 24,406 16,499 1,417 999

P 4,823 18 6,011 2,166 25,997 65,209 1,553 4,887 16,336 5,373

Q 3,025 3,994 2 4,035 6,128 2,683 1,418 2,051 17,715 8,444

R 5,381 4,240 3 26,128 6,544 33,094 731 5,231 4,044 466 2,241 38,788 28,946 4,172 1,691 22,413

S 677 8,101 2 2,407 4,917 5,850 6,081 1,807 10,680 8,474 5,111 4,895 62,986 5,297 544 1,896

T 4,980 12,441 12,600 1,422 17,388 2,906 1,796 1,616 6,010 59,825

V 5,106 2 8,455 741 773 2,176 1,660 24,361 7,891 18,398 29,550

W 1,801 1,634 1,149 326 448 1,947 321 1

Y 1,170 1,788 8,099 574 1,396 3,585 571 786 22,448

Changes by chromosome

		

		Chromosome: 1
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	172000000	173000000	174000000	175000000	176000000	177000000	178000000	179000000	180000000	181000000	182000000	183000000	184000000	185000000	186000000	187000000	188000000	189000000	190000000	191000000	192000000	193000000	194000000	195000000	196000000	197000000	198000000	199000000	200000000	201000000	202000000	203000000	204000000	205000000	206000000	207000000	208000000	209000000	210000000	211000000	212000000	213000000	214000000	215000000	216000000	217000000	218000000	219000000	220000000	221000000	222000000	223000000	224000000	225000000	226000000	227000000	228000000	229000000	230000000	231000000	232000000	233000000	234000000	235000000	236000000	237000000	238000000	239000000	240000000	241000000	242000000	243000000	244000000	245000000	246000000	247000000	248000000	249000000	
	Count    :	4689	14842	13814	14564	17663	17335	13769	14677	13123	14364	13295	14945	13608	4471	15739	16067	11818	12478	15846	15257	14523	12601	14719	12394	12494	12890	12367	10514	11517	10680	15740	14787	12079	12146	14189	13100	12059	14521	13061	12485	13135	13151	13383	13277	12583	11993	12022	13273	13537	10768	10306	11627	11893	13672	13612	15203	14613	14722	13983	14796	13676	13687	13790	13278	13218	11990	13570	13599	14271	13039	12292	12626	12576	13279	13718	13039	13566	13773	11613	15357	15093	15923	14359	12391	13292	13142	13642	13185	13135	13380	12271	13008	12425	11347	13047	13357	13245	13143	13051	13902	12820	14346	16028	13018	12688	17086	16166	13993	11410	12420	12689	14348	14518	12183	12290	12936	14349	12934	12877	13827	8307	3027	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	485	1244	1348	4664	8270	7170	750	6318	11353	11834	14768	13525	11621	10059	12173	15272	15812	13453	14554	12013	14317	14290	14076	15145	14812	14658	14889	14097	13760	14066	12733	11752	11597	15054	12359	13660	12368	13935	13583	14146	13673	13554	13300	13442	13735	14355	15903	15691	13636	12860	13251	13725	15544	14671	14220	12684	12862	13723	13023	14298	11783	14449	14028	12253	8048	12382	14769	14612	14303	13574	13054	13302	14218	13211	14590	14917	14582	13528	13344	14277	12667	13184	11705	12729	12411	14044	12378	14377	15319	13652	14922	15078	14570	12669	15769	14857	15869	14464	15768	15150	16058	11033	14657	15862	16336	15511	14790	2676

		

		Chromosome: 2
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	172000000	173000000	174000000	175000000	176000000	177000000	178000000	179000000	180000000	181000000	182000000	183000000	184000000	185000000	186000000	187000000	188000000	189000000	190000000	191000000	192000000	193000000	194000000	195000000	196000000	197000000	198000000	199000000	200000000	201000000	202000000	203000000	204000000	205000000	206000000	207000000	208000000	209000000	210000000	211000000	212000000	213000000	214000000	215000000	216000000	217000000	218000000	219000000	220000000	221000000	222000000	223000000	224000000	225000000	226000000	227000000	228000000	229000000	230000000	231000000	232000000	233000000	234000000	235000000	236000000	237000000	238000000	239000000	240000000	241000000	242000000	243000000	
	Count    :	15751	16858	16025	15257	16043	14316	16604	14843	15056	14299	15985	15016	14786	15208	14927	15012	14136	13476	15309	13914	14616	13905	13972	14653	11685	11558	12944	11571	12854	15734	15447	15363	12807	16974	19107	16998	17446	16353	17488	14074	17787	17779	15389	16068	16129	15942	16638	16715	15107	17212	15525	16388	17878	17798	14766	15136	16447	16609	12814	14593	14620	12472	12773	10233	13296	14677	13447	14832	14437	14395	13698	14922	11955	12218	12475	15390	16209	16593	14981	15915	15787	15012	14288	14112	13775	13432	12757	4593	9470	7886	3081	856	1871	0	0	6301	6827	8659	9988	11811	12892	14715	14120	13532	14006	14226	15745	14135	13051	13467	6648	7758	9671	12126	11266	14002	14191	15720	14455	14607	12847	15160	12884	15356	15555	14786	14957	15907	13880	15187	13776	9418	12026	13330	14200	12915	11969	15703	14749	14520	15223	15998	15687	13715	11867	11004	13687	11881	12117	11732	13626	13969	13203	14097	13807	13276	12621	11634	12481	14304	13323	12826	11372	13624	12962	12497	12844	14695	14795	14523	14050	14178	12810	14597	13829	12154	12925	14130	13286	12586	13901	14394	13275	12699	14360	13271	11965	12658	13001	12651	12511	12612	13672	12286	12436	13365	13422	12390	11834	12716	11010	11354	11649	10389	11961	13946	13642	12948	12693	14269	12611	13815	15378	14201	14019	13902	14198	14497	14197	11951	13830	14886	13955	13775	14733	13657	13749	13793	15483	14150	14187	15118	13154	14134	14509	16414	16766	15972	16122	14880	16246	15603	14984	916

		

		Chromosome: 3
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	172000000	173000000	174000000	175000000	176000000	177000000	178000000	179000000	180000000	181000000	182000000	183000000	184000000	185000000	186000000	187000000	188000000	189000000	190000000	191000000	192000000	193000000	194000000	195000000	196000000	197000000	198000000	
	Count    :	17664	20858	18954	19153	17691	19723	17825	18070	16232	13898	14870	14595	13847	15131	14867	13696	14730	12670	13214	13043	14826	17742	18933	14971	16062	16704	15407	14844	13759	15433	15564	14880	14750	12420	14635	13203	14106	12817	13115	13574	12448	14930	13505	12844	11790	13831	13151	9573	9830	9485	9830	10029	11485	13034	15290	14630	13801	12433	13293	15932	18601	15641	15375	15499	15731	16408	14752	15574	15223	14888	13729	13572	14799	15593	14979	13681	14711	14119	13451	13305	13973	13053	13692	13296	14445	13460	14297	14342	14649	14277	6659	0	0	5366	15480	16026	14561	14415	15451	13124	14025	12431	14745	15621	15462	14286	14446	12762	13074	13644	13128	14039	13981	12948	10960	13183	14603	14596	13855	13712	13586	12110	13021	13381	14005	15887	13786	13291	13091	14177	13338	14501	13964	14134	13650	12683	11486	12442	12110	13374	14347	13125	12897	14519	14874	15016	13765	13421	13796	13629	12487	13706	13180	14093	13563	13399	12788	13741	13401	14193	12551	14791	14627	13793	13794	14522	14656	14069	12671	13423	13272	13837	13637	13764	15075	15238	14802	13466	13412	13158	12052	11772	12568	13627	13787	12141	15077	14968	13920	15927	16586	15932	15412	15443	17184	13727	15089	12409	0

		

		Chromosome: 4
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	172000000	173000000	174000000	175000000	176000000	177000000	178000000	179000000	180000000	181000000	182000000	183000000	184000000	185000000	186000000	187000000	188000000	189000000	190000000	191000000	
	Count    :	14175	14258	14385	17427	17990	18990	17046	20044	18727	21660	19311	17531	17343	15023	16343	13387	14281	14648	14667	14464	14898	16126	15289	14929	14802	15197	13198	15826	15153	15535	15723	15837	16799	14201	14821	17089	15248	15950	15530	12576	14492	13886	14867	15893	14490	14963	14151	13169	11700	2721	0	0	4050	14369	13610	14761	14004	14439	17430	15810	17808	16303	13123	17524	17253	16063	15509	14627	14089	16055	17377	14983	14660	14667	13193	12978	14647	13883	14920	14081	12359	13759	13335	13198	14272	12567	14762	12195	13878	12344	14623	14112	14247	13131	13500	13873	14962	13364	13924	13064	12459	14247	14229	12683	14642	12641	13364	12223	13221	13388	13724	13242	12765	12342	13858	14695	14990	14772	14146	12052	13721	14562	14105	12783	13846	13964	14119	14110	11621	12786	14787	15229	12483	14646	13473	14593	15112	14612	14989	13998	12830	12928	14004	13737	14418	12698	13069	12928	12946	13025	12500	11437	13094	12657	14430	13814	15081	15027	13363	12413	14625	15170	15646	16158	14461	15470	15023	14900	13886	13834	13144	15208	15081	13717	13888	14532	14734	14941	14441	17574	16621	15541	16969	15206	15507	16228	15789	16280	15402	18627	12040	57

		

		Chromosome: 5
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	172000000	173000000	174000000	175000000	176000000	177000000	178000000	179000000	180000000	
	Count    :	15331	17084	18200	18192	15973	17505	15693	14698	16728	15495	15526	15109	14808	16201	14609	14029	15067	13743	15168	14823	13528	12417	14026	16133	15342	14730	15994	15157	14190	17034	15365	15187	14563	14948	13121	14540	13709	12741	14967	14953	15128	14716	14904	14549	13807	14707	9017	0	0	9107	13546	14785	14587	14520	14006	14359	13426	15067	13780	12092	11752	12977	14723	13109	12578	14000	14241	14281	10539	204	4204	13618	13253	15565	12606	15520	13667	13768	13606	14577	12987	12521	14161	12668	15270	14418	12633	11283	11430	11831	12647	12017	11625	10406	12941	13271	15024	15372	13452	14700	13953	14865	13571	14832	15087	13752	14972	15529	15334	16675	15522	16432	16566	16087	16643	18756	17185	18332	15646	16365	16915	15084	13647	15790	15225	16170	14413	12857	14731	13865	12710	12816	13523	12871	12583	14477	13504	10546	10294	10350	12585	14014	13966	14621	14562	14139	14488	14320	13995	14429	15146	14069	13635	13660	13846	14163	14618	14764	12955	14615	15175	14461	14115	14045	14136	14450	13907	14089	14980	14929	13771	14550	14354	15508	15673	10904	12776	12429	16688	14817	11220

		

		Chromosome: 6
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	160000000	161000000	162000000	163000000	164000000	165000000	166000000	167000000	168000000	169000000	170000000	171000000	
	Count    :	12168	15492	15576	16658	15893	15592	16328	14724	15330	14340	15690	15099	14406	15179	14076	14408	14367	14059	14976	14963	14717	13608	14851	17726	14968	14566	11556	12584	12944	19388	15422	20419	29732	16068	13883	12880	14364	13994	14080	15065	16082	13685	13458	13076	13810	14558	13775	14808	15031	14553	13669	13784	14419	14562	15421	15128	12609	9270	9419	0	0	2526	14860	15451	13567	15405	15725	17882	15316	14640	14055	13967	14080	13054	14457	14696	13830	16054	14843	15473	14670	16727	14326	13009	13186	14735	15122	16281	14157	14190	12277	13936	15081	15367	14177	13329	13952	12532	11671	12366	13010	13705	14697	14484	14558	12787	13849	13631	12394	13439	13980	11933	13506	13883	12506	14624	12695	12993	13209	13864	14747	13972	12880	14414	14311	13432	10928	12251	13209	14111	14937	14257	14575	14799	13754	13223	12595	14416	14864	14342	12109	13053	13785	13759	13594	14126	12677	13559	15174	14332	15790	15340	14248	14221	15671	14387	14971	12386	14782	15767	14704	15171	16607	14309	15303	15664	15976	15822	16207	16913	13936	90

		

		Chromosome: 7
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	156000000	157000000	158000000	159000000	
	Count    :	17911	17838	17720	22049	19866	17396	16008	18664	19166	18690	17279	17312	19096	18085	16846	17668	16680	16241	14843	18365	16874	17407	14952	14323	15135	15303	13301	12791	14661	14293	13323	14668	14653	13796	13924	13223	14704	14370	14932	12632	12301	14919	14535	13221	11983	13857	15585	15635	14403	15707	14137	15159	18110	16730	16524	14470	12431	11224	579	0	0	4151	15553	11659	12477	9846	13475	16952	15467	10699	15405	15427	7948	11587	2160	12328	9401	13470	15169	14424	15082	13831	14043	13949	13084	14616	13256	11641	14351	14291	13035	11782	11360	12988	12030	12992	12823	13927	13539	11289	12101	13388	9481	15884	14223	13789	13480	14458	14462	15141	13486	13189	12280	12231	12125	12991	11345	11807	13678	13063	12764	12707	13360	12735	13851	15990	13576	12316	12514	12537	11405	14564	13537	12772	14087	14316	13614	14398	14552	13452	12603	14455	12941	7858	13578	14679	15754	17312	14692	13895	15095	14808	15207	14975	15473	17306	15626	18377	16891	2052

		

		Chromosome: 8
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	
	Count    :	18308	23696	23642	37462	35254	31724	26015	3000	19970	19641	21108	20011	14035	25252	22359	23445	20384	21924	20740	19491	18264	16263	15242	16056	14944	14609	15462	15289	13198	14925	13116	14221	13686	13531	14647	12122	13204	13243	11743	14303	16061	14282	12229	13919	0	0	1994	16044	9965	12405	15090	15889	14883	14086	14562	13833	14902	14833	16580	14064	13806	13594	14760	15384	12448	12405	13711	12131	13451	14064	14769	12983	14433	14466	13586	13864	14351	13592	14144	13611	12858	13159	14306	14420	15885	14017	8199	14756	14972	13611	14603	13076	12065	11959	12665	13303	14011	13344	13417	11618	10927	13405	14554	13416	13888	14101	13129	13443	14179	13376	12954	12653	13143	13148	14030	14177	12514	12701	13606	14464	13654	13201	14282	14653	13761	14572	14330	15742	15750	15810	14943	15331	16134	14589	16475	16118	15611	15337	15373	15838	17065	13787	14658	15752	15622	10201	4495

		

		Chromosome: 9
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	
	Count    :	19148	22876	20004	17558	21254	17041	17495	20600	20578	20422	19587	20910	18250	16993	17064	17243	18240	18284	18103	16547	15916	16851	16361	17293	16658	17628	16143	16827	16471	16108	15351	16193	14890	12744	11404	11035	13617	12837	11922	1885	1322	579	361	2819	5279	602	266	213	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	317	1184	422	2086	1352	762	13456	13144	13632	12988	12353	12759	13693	14877	14941	14170	15154	14201	15451	11789	13078	13479	14372	12880	14610	15101	14706	12135	14660	13888	12114	13434	12719	13716	11886	12597	14050	10814	13227	14930	16352	15681	15314	13710	13253	15865	15590	14707	14880	13810	13217	13626	14684	13207	14405	13927	14031	13715	11759	13591	12891	13274	12533	12936	12578	12291	12181	14707	12371	13636	14554	16235	16371	16547	14525	13293	1242

		

		Chromosome: 10
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	
	Count    :	14518	17394	18914	18217	17473	17149	16672	16487	15941	13571	16147	15569	16863	16785	17017	16570	17418	13145	13348	17662	16662	14089	12662	14446	15063	14998	16080	14802	13710	16175	16322	14015	14211	14492	14810	13032	14984	14074	11454	1646	0	0	7767	14525	15982	15301	3417	3884	5475	9465	15731	4252	13273	15546	15433	16126	15584	14756	15978	15410	12926	14006	14650	14132	13842	13463	15476	15827	15959	13138	13608	15568	15625	15174	11534	11293	11396	12776	13641	14334	15198	13539	14468	15477	14243	15827	14750	14898	12456	10843	13206	14421	14221	11681	12014	14027	13721	11986	13140	13134	13156	12335	12589	9818	10689	11900	13617	13852	14905	15585	16842	14545	14031	16196	13165	14467	13605	14475	12782	13439	14225	14106	15216	15126	14207	15178	14621	14821	13087	17048	16726	15302	18155	15745	16171	6826

		

		Chromosome: 11
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	
	Count    :	12911	14370	15015	15657	17768	18671	15430	16417	14357	13427	14147	16119	15342	14643	10816	13872	11747	12564	14047	15405	15606	16749	15415	16357	16941	17206	15525	12008	11858	14121	12965	10856	13575	12735	14764	14907	14871	15737	14849	14945	14232	15071	16510	13543	14505	13967	10419	10973	16169	14062	14845	10735	0	0	4981	20072	15311	12187	13977	13942	13766	12071	12957	12802	11760	11720	10784	14048	14352	14205	14789	15977	12284	12999	12878	13162	13725	12873	15120	15844	15863	16677	14235	15107	14079	14109	14911	15649	14997	10062	15262	15427	13403	13758	14182	14189	13054	15398	16474	17839	14556	14931	14514	14687	14507	12304	13579	14187	13344	13939	13919	12446	14298	13584	14400	13437	15352	14936	12774	14205	13915	13668	14042	15656	14179	13660	14719	14219	14183	14244	15329	17039	15804	14875	16470	0

		

		Chromosome: 12
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	
	Count    :	12756	15187	14444	15446	14520	14846	15157	13169	15637	13740	15228	15162	14592	14493	13750	13518	12995	13759	14678	14770	14885	15046	12616	13732	14477	14698	14571	13783	13058	15111	16536	14223	15170	15123	17267	0	0	2510	19718	14076	13587	15003	14290	14119	13590	14149	12846	14919	13534	11352	11618	11946	14326	13591	11811	16140	11286	11258	13245	13693	13528	15634	13417	14513	12196	11990	13237	14000	13769	13393	13631	13568	12586	14145	13147	13751	13844	14062	14672	12723	12466	13075	13538	14792	14799	12493	13844	13610	11627	12054	12131	13344	14036	13425	14462	14522	13533	14110	14058	13391	13064	14132	12765	13952	14141	14118	14302	13212	14963	12645	11247	11271	9031	12980	15836	15707	13382	14445	13853	14507	12644	13718	12028	11460	14462	15506	16697	17145	17363	17562	16919	16828	13744	10511

		

		Chromosome: 13
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	
	Count    :	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15968	13483	14492	15469	16791	16473	15128	15287	15896	14475	15219	15179	14714	14354	14485	14961	12986	13391	13364	14816	15191	14381	12932	13418	14485	13136	12605	13998	13779	14179	13349	11901	12791	11546	12918	12716	13753	12762	11186	12057	13245	12910	14984	15342	13385	15170	13563	13832	13033	14224	14997	15508	15382	14143	14007	14222	14587	15115	13548	13863	14679	12299	13670	13861	15003	13970	15821	12362	13664	14147	13909	15291	14484	14899	14151	14531	14820	12941	13395	14359	14666	13588	14473	14395	15109	16452	16552	16175	14849	15304	16284	16076	16131	14362	15874	13648	1732

		

		Chromosome: 14
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	
	Count    :	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2354	14137	15424	17187	14039	14700	15124	13996	12828	14708	12962	13678	13254	14479	14945	15703	13210	12419	13500	12814	14036	15000	15159	15195	15564	14977	12663	15311	13747	15488	15123	13288	14429	15157	14199	13236	14379	15541	13380	13540	14011	12510	13430	15271	14132	12981	13653	13512	12882	12472	13487	14532	13143	14706	13815	14084	12786	13791	14409	14400	13856	13511	13673	14613	15052	14378	14618	15290	14312	15341	14085	14032	13915	14698	13926	15511	16817	16491	15187	17267	15650	14088	15022	13713	14618	15202	14592	17454	6462

		

		Chromosome: 15
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	
	Count    :	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2833	726	7698	8638	20212	15959	16294	15437	8626	14524	6525	14321	8171	17407	14253	13221	13826	13568	13854	16589	13276	12770	13602	9829	10970	12761	15925	13666	12992	11951	13632	12990	14067	16227	17411	16086	14284	15440	17654	15641	15616	15421	14906	14715	12760	12911	13751	13109	13838	13250	14424	12981	10862	12243	12144	10520	12271	12622	14098	15570	15656	14066	7371	9305	11087	11713	17461	17845	16452	15956	14867	15793	17167	17640	16024	15522	14507	14736	17382	15313	18663	17489	6671

		

		Chromosome: 16
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	
	Count    :	16261	17373	13643	16043	17247	23929	29185	28226	22770	18724	19647	17761	22482	18269	10077	9632	8729	15596	7178	14387	13215	7653	8851	13338	14467	15319	16458	14241	8682	8661	8573	10947	3093	3310	9968	3625	0	0	0	0	0	0	0	0	0	0	4761	10162	12561	14117	13499	15721	15531	12613	15245	16231	13783	14610	14158	13606	13305	12843	13910	13350	14110	14356	12421	9642	11722	11764	10429	10392	12979	16041	14656	16151	18723	20280	28600	24371	21751	21615	23621	24195	23744	19025	22604	20637	18456	17792	2976

		

		Chromosome: 17
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	
	Count    :	15620	15989	14042	15490	15334	15480	15393	13151	13967	16122	15109	14755	15486	17029	17426	13481	12005	12597	9179	10789	10846	9369	3569	0	0	9312	11663	10727	10522	12567	12695	14322	15603	12982	9600	12648	10668	12181	12365	15908	10838	12097	11603	11816	8234	11382	11243	11806	13836	13449	13956	14169	14426	13636	14026	14302	11255	10528	10758	11298	12135	12596	10771	14756	14777	12914	14940	12836	14217	15260	15518	15660	15411	13540	14946	15924	16977	14316	16161	14261	16124	2044

		

		Chromosome: 18
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	
	Count    :	14231	15059	15243	15235	15910	15679	15368	15316	16404	14959	16778	16111	13975	15343	14212	4177	0	0	4488	12019	12747	12598	14873	13857	13381	13080	13312	14998	15185	14021	12073	12604	12525	13791	11868	14191	13421	12901	15031	13896	14055	14017	13763	14598	13427	14132	14036	15696	13940	15185	16787	15073	11499	11348	14156	14952	14676	16076	15506	14637	12892	14965	15441	15577	14752	16004	15029	14732	14872	15965	16561	16319	13771	16771	16651	16745	17399	15727	228

		

		Chromosome: 19
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	
	Count    :	13962	15204	16841	14969	15200	14637	16157	13940	13368	15579	13405	13862	12791	13475	13875	15173	14224	14660	12685	12229	15015	15844	16360	14747	9445	0	0	3225	16850	17080	14338	14325	14365	14126	13117	14411	12855	11293	12270	14033	13242	14530	11644	18670	14040	14213	14045	13041	14739	14520	13827	15312	15758	17774	17230	16380	16946	14917	14069	1283

		

		Chromosome: 20
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	
	Count    :	15205	14558	14585	13693	15458	15729	15093	15589	13804	13896	14158	14775	15591	13550	12894	15088	16074	15632	14721	14833	13212	12427	15786	17232	16792	12031	1962	0	0	4937	11281	13783	11399	11281	10874	11502	14646	13203	13305	13253	14217	15273	14489	13090	13846	14653	14989	14271	13720	14206	14624	14140	14786	16135	16196	15570	15894	13767	15409	16690	17105	14892	13372	0

		

		Chromosome: 21
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	
	Count    :	0	0	0	0	0	0	0	0	0	865	989	116	0	0	5684	14381	15593	14940	17393	14923	16014	16872	16205	16076	16953	17810	14518	15053	15286	15713	14488	15888	14680	14260	12681	14226	15227	14746	14325	14270	14994	16457	15112	17717	14455	16042	17237	15221	1555

		

		Chromosome: 22
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	
	Count    :	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2170	13418	13032	14500	8940	8535	15427	17104	13082	15171	15008	16786	10836	12560	12170	12073	14482	14300	16550	15563	13975	15543	12446	14391	11310	11729	13018	15481	15737	16958	16116	17979	18207	21370	15290	3071

		

		Chromosome: X
	Position :	0	1000000	2000000	3000000	4000000	5000000	6000000	7000000	8000000	9000000	10000000	11000000	12000000	13000000	14000000	15000000	16000000	17000000	18000000	19000000	20000000	21000000	22000000	23000000	24000000	25000000	26000000	27000000	28000000	29000000	30000000	31000000	32000000	33000000	34000000	35000000	36000000	37000000	38000000	39000000	40000000	41000000	42000000	43000000	44000000	45000000	46000000	47000000	48000000	49000000	50000000	51000000	52000000	53000000	54000000	55000000	56000000	57000000	58000000	59000000	60000000	61000000	62000000	63000000	64000000	65000000	66000000	67000000	68000000	69000000	70000000	71000000	72000000	73000000	74000000	75000000	76000000	77000000	78000000	79000000	80000000	81000000	82000000	83000000	84000000	85000000	86000000	87000000	88000000	89000000	90000000	91000000	92000000	93000000	94000000	95000000	96000000	97000000	98000000	99000000	100000000	101000000	102000000	103000000	104000000	105000000	106000000	107000000	108000000	109000000	110000000	111000000	112000000	113000000	114000000	115000000	116000000	117000000	118000000	119000000	120000000	121000000	122000000	123000000	124000000	125000000	126000000	127000000	128000000	129000000	130000000	131000000	132000000	133000000	134000000	135000000	136000000	137000000	138000000	139000000	140000000	141000000	142000000	143000000	144000000	145000000	146000000	147000000	148000000	149000000	150000000	151000000	152000000	153000000	154000000	155000000	
	Count    :	18480	16356	15267	11556	12151	12232	10475	8585	9965	11082	9089	8769	10529	9967	9096	9027	8999	7956	8656	9302	8699	8295	12456	10886	8420	9104	9080	9922	8962	9883	9964	10364	14071	10987	10567	9985	9591	9123	9560	9275	9652	8492	9471	8745	8898	9743	8585	8708	8006	6470	8466	7889	3217	7472	7936	9101	11481	11335	7434	0	0	2785	10458	11633	10014	12758	11619	9568	9358	8530	7094	7941	8432	7872	10197	13335	10568	9281	11650	11011	10282	11836	10854	10007	12061	11040	12695	13234	9759	8473	9747	7786	9794	11660	11478	10640	8924	9598	9232	8674	9105	6591	8117	7898	8549	8151	7623	8311	10794	8663	8631	10985	10279	9211	9410	11526	13060	10095	10332	8718	8742	11534	9260	9463	10616	10316	10329	9215	9612	8259	8515	8369	7971	7676	6725	8003	8745	9477	9932	9898	9022	12115	11533	10429	11935	11747	10704	9391	8199	8617	10825	9115	8092	7046	6907	3382

Genome	GRCh37.66
Date	2012-04-24 09:15
SnpEff version	2.1a (build 2012-04-20), by Pablo Cingolani
Command line arguments	SnpEff eff -v -useLocalTemplate -stats 1kg/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf.html GRCh37.66 1kg/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf
Warnings	0
Number of lines (input file)	39,706,715
Number of variants (before filter)	39,706,715
Filter
Number of variants filtered out	0
Number of not variants (i.e. reference equals alternative)	0
Number of variants processed (i.e. after filter and non-variants)	39,706,715
Number of known variants (i.e. non-empty ID)	37,979,185 ( 95.649% )
Number of effects	127,992,620
Genome total length	20,682,031,140
Genome effective length	3,036,303,846
Change rate	1 change every 76 bases

	-	AAA	AAC	AAG	AAT	ACA	ACC	ACG	ACT	AGA	AGC	AGG	AGT	ATA	ATC	ATG	ATT	CAA	CAC	CAG	CAT	CCA	CCC	CCG	CCT	CGA	CGC	CGG	CGT	CTA	CTC	CTG	CTT	GAA	GAC	GAG	GAT	GCA	GCC	GCG	GCT	GGA	GGC	GGG	GGT	GTA	GTC	GTG	GTT	TAA	TAC	TAG	TAT	TCA	TCC	TCG	TCT	TGA	TGC	TGG	TGT	TTA	TTC	TTG	TTT
-		29	11	24	1	2	9	1	4	9	36	42	7		5	15	7	18	7	15		24	32	30	30		5	8	8	6	8	16	10	5	12	11	6	15	33	12	8	11	18	28	9	4	8	8	3					6	8	4	7		6	10	5	3	9	7	4
AAA	1,260	28	828	6,196	606	1,082			2	4,400				581				1,097																3,368																187
AAC	1,474	1,524	6	1,311	18,035		763				5,802				700				742																2,099																361
AAG	1,796	10,759	1,830	24	1,777		8	1,286				5,732		6		756				1,586																3,387																198
AAT	1,392	700	6,347	565	18				654				10,697				603				1,026																2,477																638
ACA	1,229	813				16	1,434	7,252	1,126	1,061			6	4,390		4	2					500																4,192																751
ACC	1,970		2,125			2,117	10	3,043	14,941		1,579				4,975								554																3,316																825
ACG	631			605		21,381	1,290	4	1,408			555				17,384								135																1,091																248
ACT	1,150	4			781	741	3,743	1,306	13				1,662				3,233								607																3,842																939
AGA	659	2,220				968				5	507	2,750	514	731												736																1,921																116
AGC	1,960		4,657				1,452			1,358	5	1,215	14,203		1,065												576																2,990																453
AGG	1,077	5		3,006				723		4,531	716	6	941			466												963																1,738																257
AGT	806				3,817				1,363	494	3,549	587	18				742												665																3,091																615
ATA	362	178				2,557				257					476	1,966	475													432																4,620																551
ATC	1,450		847				2,208				419			2,751	7	1,635	13,989														908																6,923																902
ATG	1,110		2	817				6,418		1	1	817		4,581	826	10	1,147															1,220																9,563																1,474
ATT	663			5	402				5,837				517	903	3,260	1,139	13																662																6,715																705
CAA	783	1,018																8	821	8,276	509	753				2,229				310				1,436																791
CAC	1,345		798															950	3	1,316	14,844		448				2,424				516				577																3,282
CAG	3,213			1,665														9,420	2,838	11	1,960	4		1,294				6,215				1,108				2,599																2,234
CAT	950				567													545	5,356	537	2				567				4,809				731				521																2,495
CCA	1,380					1,382												893				5	1,425	7,489	933	1,023				3,724			3					1,822																3,898
CCC	1,814						1,917												1,296			1,909	7	3,537	16,979		1,608				4,023	3							1,562																5,571
CCG	640							321												660		23,208	1,193	7	1,706			757				14,316								430																1,296
CCT	1,007								1,753										4		866	1,043	4,453	1,305	10		3		1,496				3,928								2,197																5,571
CGA	602									1,265								12,733				515				5	436	1,061	302	670												884																5,265
CGC	934										970							2	19,001		1		429			747	4	723	6,117		1,762												646																17,352
CGG	706											2,219								26,053				873		3,491	899	7	1,096			935												961																22,156
CGT	265												524								14,092				424	202	1,135	245	1				677												394																8,776
CTA	439													384				178		2		799				182				4	555	4,945	330													939																2,144
CTC	1,410														917				437				1,142		3		472			1,309	2	3,572	12,493														1,876																4,635
CTG	3,649															1,878				934			1	3,516	3	3	4	1,018		11,414	3,913	26	3,150															3,638																11,167
CTT	643																834		3		237				1,394		2		518	492	2,389	1,074	2																1,280																2,611
GAA	1,822	7,175																1,749																23	1,635	7,693	1,034	1,188			6	3,032		12	5	697			3	664
GAC	2,546		8,917																1,540															2,063	8	2,205	24,104		631		78		2,742				1,015	1			1,169
GAG	2,968			13,336																3,287														14,790	3,133	38	2,240	1	4	1,378	4	3		3,441			3	1,188				775
GAT	1,530				6,904																1,639													1,312	7,995	1,262	10				633				3,741				1,812				1,535
GCA	1,169					7,572																816												1,000		1		4	1,654	6,413	896	948				3,499		4						1,602
GCC	2,782						13,021																1,035											1	1,726			1,979	21	2,894	21,078		1,555				6,408								3,002
GCG	799							2,802																218												866		21,271	1,139	6	1,172			559				13,512								582
GCT	1,340								6,768																1,245												844	909	4,784	1,071	1			1	1,402	2			3,658								2,148
GGA	1,662									5,610																522								2,885		1		1,155				2	1,065	3,036	1,157	1,017												277
GGC	3,047										9,757																870								4,258				1,239			2,332	16	1,611	14,030		1,737	1											905
GGG	946											6,738																1,338								3,025				1,199		6,869	1,497	10	2,397			995												808
GGT	921												4,211																800								2,704				699	548	2,741	638	4	4			1,342												760
GTA	346													4,833																628				191				1,222				210				3	383	2,891	413													641
GTC	1,357														12,606																1,007			4	444				1,539				282		1	1,113	1	1,825	7,642														1,099
GTG	2,869															18,398																2,084		2		576				3,613			2	823		8,947	1,781	43	1,920															2,542
GTT	536																6,922																989				297				2,081				342	335	1,516	734	3																1,077
TAA	13	12																54																19																	16	81	16	19				146				15
TAC	1,301		310																1,803																321															327	4	379	15,539		416				2,478				556
TAG	13			12																77																28														58	33	2	12			6				28				3
TAT	487				261																1,782																253													249	6,903	215	2				370				5,621				840
TCA	1,523					649																1,452																644												223		1		2	1,093	4,567	937	327				2,363
TCC	2,033						944																1,601																857												1,055		1	1,019	15	1,720	13,381		1,604	2		1	3,491
TCG	411							95																353																90												126		14,958	1,156		1,066			542				8,316
TCT	1,370								794																1,705																816												840	663	3,648	965	21				2,245				2,359
TGA	74									35																145																32								244				52					22	53	20	18
TGC	1,499										356																1,151																399								1,526				480			251	8	401	8,732		639
TGG	1,634											271																1,676																326								906				321		895	559	1	590			448
TGT	1,084												373																1,735																529								2,092				757	131	2,263	244	1				463
TTA	330													304																1,163																370				66				827				91				13	309	1,974	268
TTC	1,318														391																1,889																627				464				1,115				507		6	1,067	30	1,195	11,336
TTG	604															538																5,458																837				125				1,349				577		3,322	1,064	2	814
TTT	754																360																1,702																477				475	1			1,324				613	446	4,055	756	4

	*	-	?	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
*	531	95	5		42		47		32			24	36				131	180	77			81	77
-		130,393		68	11	18	16	13	66	7	12	53	50	15	12	116	33	72	68	16	23	10
?		4	178
A		6,088	2	65,292		2,570	1,868		4,465							3,314			7,334	30,163	27,083
C	382	2,582	1		11,004			1,102	928									2,886	1,966			645	3,618
D		4,076		1,342		32,117	6,842		6,483	3,179					15,821						2,828		2,704
E	1,439	4,790		2,581		8,042	22,544		6,493			20,511					5,036				1,891
F		2,070	2		1,126			15,425			751		7,055						2,440		1,104		939
G	277	6,573	3	4,292	1,665	6,962	5,911		37,953									15,878	13,968		5,096	808
H		2,295				1,098				20,205			1,247		1,365	1,015	3,348	7,233					5,777
I		2,475						1,607			21,874	183	2,553	4,740	1,249			257	936	10,602	18,258
K	385	3,056					6,755				587	17,007		756	5,041		2,683	10,132		2,378
L	282	7,072	3					9,701		677	2,439		70,913	2,416		6,858	1,114	2,199	2,176		8,940	577
M		1,083	27								6,554	817	2,694	10	2			818	1	6,418	9,563
N		2,866				4,576				1,768	1,303	4,100			24,406				16,499	1,417			999
P		4,823	18	6,011						2,166			25,997			65,209	1,553	4,887	16,336	5,373
Q	3,025	3,994	2				4,035			6,128		2,683	1,418			2,051	17,715	8,444
R	5,381	4,240	3		26,128				6,544	33,094	731	5,231	4,044	466		2,241	38,788	28,946	4,172	1,691		22,413
S	677	8,101	2	2,407	4,917			5,850	6,081		1,807		10,680		8,474	5,111		4,895	62,986	5,297		544	1,896
T		4,980		12,441							12,600	1,422		17,388	2,906	1,796		1,616	6,010	59,825
V		5,106	2	8,455		741	773	2,176	1,660		24,361		7,891	18,398							29,550
W	1,801	1,634			1,149				326				448					1,947	321			1
Y	1,170	1,788			8,099	574		1,396		3,585					571				786				22,448